PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g02550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SRS
Protein Properties Length: 286aa    MW: 31777.2 Da    PI: 7.8646
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g02550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702210.73.6e-651132543154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                     s +++CqdCGnqakkdC+h RCRtCCk+rgf+C+thvkstWvpaakrrerqqqla+++s ++ +  e+ +kr ++         +++ +s  ++ 
  Vang05g02550.1 113 SSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLASLQSPQQFR-PENIPKRYHR---------DTQLVSAPQPI 197
                     5689****************************************************97766443.3333333332.........23344555667 PP

          DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                       le  ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkGiLydqG+e+
  Vang05g02550.1 198 AGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPES 254
                     78999**************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.9E-62115253IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.6E-26117159IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-25204252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAGFFSLGGT RRGGPQNKEE GEVEKGDNNI HNNNRNNLLL FRNEEIYNKG FEIWPESYQP  60
QAAPQNLSNY FAFGVGPSRR NCSSVNEEEV SLCVSDESTR FGLTVMRSGG AGSSGMNCQD  120
CGNQAKKDCT HLRCRTCCKT RGFQCQTHVK STWVPAAKRR ERQQQLASLQ SPQQFRPENI  180
PKRYHRDTQL VSAPQPIAGL ELGHFPPEVS TSAVFRCVRV SAVDASDEQC AYQTSVNIGG  240
HVFKGILYDQ GPESSYTSAI DDRSTEHYNS KRLGLSYVYS EWVGL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g02550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435781.10.0PREDICTED: protein SHI RELATED SEQUENCE 5
RefseqXP_017435782.10.0PREDICTED: protein SHI RELATED SEQUENCE 5
SwissprotQ9FXH72e-70SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
SwissprotQ9LQZ52e-70SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0L9V9750.0A0A0L9V975_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RB470.0A0A0S3RB47_PHAAN; Uncharacterized protein
STRINGXP_007136048.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.22e-64SHI-related sequence 7
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]