PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang05g02550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 286aa MW: 31777.2 Da PI: 7.8646 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 210.7 | 3.6e-65 | 113 | 254 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s +++CqdCGnqakkdC+h RCRtCCk+rgf+C+thvkstWvpaakrrerqqqla+++s ++ + e+ +kr ++ +++ +s ++ Vang05g02550.1 113 SSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLASLQSPQQFR-PENIPKRYHR---------DTQLVSAPQPI 197 5689****************************************************97766443.3333333332.........23344555667 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkGiLydqG+e+ Vang05g02550.1 198 AGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPES 254 78999**************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.9E-62 | 115 | 253 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.6E-26 | 117 | 159 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.9E-25 | 204 | 252 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MAGFFSLGGT RRGGPQNKEE GEVEKGDNNI HNNNRNNLLL FRNEEIYNKG FEIWPESYQP 60 QAAPQNLSNY FAFGVGPSRR NCSSVNEEEV SLCVSDESTR FGLTVMRSGG AGSSGMNCQD 120 CGNQAKKDCT HLRCRTCCKT RGFQCQTHVK STWVPAAKRR ERQQQLASLQ SPQQFRPENI 180 PKRYHRDTQL VSAPQPIAGL ELGHFPPEVS TSAVFRCVRV SAVDASDEQC AYQTSVNIGG 240 HVFKGILYDQ GPESSYTSAI DDRSTEHYNS KRLGLSYVYS EWVGL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang05g02550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435781.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 5 | ||||
Refseq | XP_017435782.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 5 | ||||
Swissprot | Q9FXH7 | 2e-70 | SRS7_ARATH; Protein SHI RELATED SEQUENCE 7 | ||||
Swissprot | Q9LQZ5 | 2e-70 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0L9V975 | 0.0 | A0A0L9V975_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RB47 | 0.0 | A0A0S3RB47_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136048.1 | 1e-158 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19790.2 | 2e-64 | SHI-related sequence 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|