PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g02530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24677.8 Da PI: 4.2037 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kGVr++ +g+WvAeIr+p + r +r +lg+f t ++Aa a++aa++kl+g Vang05g02530.1 13 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSQDAALAYDAAARKLYG 62 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.07E-19 | 12 | 72 | No hit | No description |
SMART | SM00380 | 5.0E-34 | 13 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-21 | 13 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.997 | 13 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-30 | 14 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-13 | 14 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRGKGGPENA SCTFKGVRQR TWGKWVAEIR EPNRGARLWL GTFETSQDAA LAYDAAARKL 60 YGPDAKLNLP DHPVPPVSHF PPPPPPVINT PTPDMENLQQ PLMQNNLDIP TCSNFNFNPA 120 VSMASHEVGL TPIYTSDCIV SLPLDTNPKP IATYTKPEGI EGEFSPSWET MTETLPVFDD 180 SIWAEAAMSL DLPLIAAENA IYTPENNNLA ADVDMWDPQT PWCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 14 | 70 | 6 | 63 | ATERF1 |
3gcc_A | 3e-19 | 14 | 70 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g02530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434420.1 | 1e-166 | PREDICTED: dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A0S3RB60 | 1e-165 | A0A0S3RB60_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136043.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-34 | ERF family protein |