PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g02020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 325aa MW: 35436.7 Da PI: 10.5017 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.3e-06 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vang05g02020.1 101 FVCEICNKGFQRDQNLQLHRRGH 123 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00028 | 177 | 199 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H +t+ Vang05g02020.1 177 WKCERCSKKYAVQSDWKAHTKTC 199 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.91E-7 | 100 | 123 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-6 | 100 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 4.7E-5 | 101 | 123 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 142 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 165 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.91E-7 | 172 | 197 | No hit | No description |
SMART | SM00355 | 220 | 177 | 197 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
LRRKGKPPLL FGKETNNSYK KGKVILRETL RGILQFILVN KTTMAEPQNP SPFTHSSASE 60 IAAQPQPLPP PKRKRNLPGM PDPDAEVIAL SPKTLLATNR FVCEICNKGF QRDQNLQLHR 120 RGHNLPWKLR QRGSKEPRKK AYVCPEPSCV HHNPTRALGD LTGIKKHFCR KHGEKKWKCE 180 RCSKKYAVQS DWKAHTKTCG SREYRCDCGT LFSSASLLRG LGLATTSPSS LGKDEVFNIS 240 ATTTAQWNGQ VKQENQPVVD NLGLGLPCGS DVMMGPSTPF VGQPMTRDLL GLSIGGGASR 300 GGLSALVTSF GGNFDSAGDG GVHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-21 | 173 | 213 | 3 | 43 | Zinc finger protein JACKDAW |
5b3h_F | 6e-21 | 173 | 213 | 3 | 43 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 139 | KLRQRGSKEPRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g02020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498477.1 | 1e-121 | protein indeterminate-domain 2 | ||||
TrEMBL | A0A1S3TXI1 | 1e-120 | A0A1S3TXI1_VIGRR; protein indeterminate-domain 2 | ||||
STRING | GLYMA06G03630.2 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 2e-89 | C2H2-like zinc finger protein |