PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g01590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 904aa MW: 100125 Da PI: 8.4771 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.8 | 3.6e-17 | 803 | 893 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp +f++++ + ++ +tl de+g+++ + k++ + l++GWk+F+ a++L +gD ++F+l++r++f + Vang05g01590.1 803 FIKSMLQSHVSGGFWLGLPVHFCKSNlpK----GDEVMTLIDEDGNEYPTIY--LKRKTG--LSGGWKGFAVAHDLADGDALIFQLIKRTTF--K 887 89*********************999543....4458***************..666644..9************************98888..9 PP EEEE-S CS B3 94 vkvfrk 99 v ++r+ Vang05g01590.1 888 VYIIRA 893 988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53474 | 9.7E-9 | 74 | 253 | IPR029058 | Alpha/Beta hydrolase fold |
Pfam | PF05705 | 9.7E-29 | 115 | 362 | IPR008547 | Protein of unknown function DUF829, TMEM53 |
Gene3D | G3DSA:3.40.50.1820 | 1.0E-4 | 147 | 247 | IPR029058 | Alpha/Beta hydrolase fold |
SuperFamily | SSF51735 | 5.0E-62 | 399 | 719 | IPR016040 | NAD(P)-binding domain |
Gene3D | G3DSA:3.40.50.720 | 4.5E-60 | 400 | 718 | IPR016040 | NAD(P)-binding domain |
Pfam | PF01370 | 5.9E-29 | 402 | 626 | IPR001509 | NAD-dependent epimerase/dehydratase, N-terminal domain |
CDD | cd05228 | 2.24E-115 | 402 | 718 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 797 | 894 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-24 | 797 | 894 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.76E-26 | 801 | 892 | No hit | No description |
Pfam | PF02362 | 3.1E-15 | 803 | 893 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 803 | 894 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-26 | 803 | 894 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0016487 | Biological Process | farnesol metabolic process | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0047886 | Molecular Function | farnesol dehydrogenase activity | ||||
GO:0050662 | Molecular Function | coenzyme binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MHSAKGIGEV AITPKLKYKA VPAFWLLMGP SHLTLPGLDQ YGYPDQVRFF PEKATILAVD 60 ILNELVEVLK IRQCPIVFAS FSGGSKACMQ KILQIISGSS EAHNMDDYQL VRECISGYIY 120 DSSPIDFTSN LGVRFLLHPN VLKVSHPPRF ASWFANGIAS GLDSLFLSRF ESQRAEYWQT 180 LYSTINMKVP YLILCSENDD LAPFQVISNF FQRLKDLGGD VKMLKWSASP HVGHFRHHPI 240 DYKAAITEIL GKAVATYCCK SSRKVEDEKL GIEGARDEIT DPFSESRKAA MTSTSFQGFA 300 LAPSDSLSSS STEYEVGKDI GTIADERKGG YIHLPSRPSI NAHGLLSQIL FDVCVPKNVE 360 DWDIRSSSKN ALSAVLGKSK KTERVFQNQR EFFRVESGTM KILVTGASGF LGGRLCDALL 420 LQGYSVRVLV RSTSDISSLS PDIEIFHGDI TDYASILAAC SSCTIVFHLA ALVEPWLPDP 480 SKFFSVNVGG LKNVLAAVME TRTVEKLLYT SSFFALGPTD GGVADENQVH HEKYFCTEYE 540 KSKAAADKIA LQAASEGVPI VLLYPGVIYG PGKVTAGNVV ARMLVERFSG RLPGYVGYGS 600 DKFSFSHVDD VVEGQISAMK KGKVGSRYLL TGENASFKHV FDMAAVITDT KKPVFSIPLW 660 VIEVYGWLSV LFSRITGKLP FISPPTVHVL RHRWEYCCEK AKSELDYRPR SLKEGLAELK 720 SIKKSRTTEK ELVVVRRSGR LAKLCSPVYK EMPIDRISIP RRCVSNRHRD LSNRVYASDE 780 ARMEALEQAE NLMSGLKSDI PNFIKSMLQS HVSGGFWLGL PVHFCKSNLP KGDEVMTLID 840 EDGNEYPTIY LKRKTGLSGG WKGFAVAHDL ADGDALIFQL IKRTTFKVYI IRANGPSKDK 900 QLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wj7_A | 7e-43 | 396 | 718 | 8 | 330 | Putative oxidoreductase |
3wj7_B | 7e-43 | 396 | 718 | 8 | 330 | Putative oxidoreductase |
3wj7_C | 7e-43 | 396 | 718 | 8 | 330 | Putative oxidoreductase |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g01590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498JD23 | 0.0 | A0A498JD23_MALDO; Uncharacterized protein | ||||
STRING | GLYMA06G04186.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11336 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-54 | B3 family protein |