PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g01400.1
Common NameLR48_Vigan09g016200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 235aa    MW: 25804.2 Da    PI: 10.0406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g01400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08137177954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Vang05g01400.1 137 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 177
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13129187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14132186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6138177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-6151182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDGFHPQEDF YSNNNNIRSG STMPLADLLD NNPPSHLPWS SYSFTHLIPS PTSSAIISFS  60
DNSNNPTPIM LQQTPTEGAT ATATANPYGE KRSSMAAMRE MIFRMAAMQP IHIDPESVKA  120
PKRRNVKISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ  180
VQSLERASAN NIRPLVGVNA PGIGFPVAMS GSIRTATTSG SNFTPYFPLP NTYD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g01400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435684.11e-173PREDICTED: transcription factor HEC2-like isoform X1
RefseqXP_017435685.11e-173PREDICTED: transcription factor HEC2-like isoform X2
TrEMBLA0A0L9V9421e-172A0A0L9V942_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RAY11e-172A0A0S3RAY1_PHAAN; Uncharacterized protein
STRINGXP_007136691.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-41bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]