PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g00820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 271aa MW: 30614 Da PI: 6.5781 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.1 | 7.5e-08 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++ e+++fC ++ lC+ C ++H+ H Vang05g00820.1 4 QCDVCDKMEATIFCPADEAALCHGCDRTIHHAnklatkH 42 7******99********************7443566666 PP | |||||||
2 | zf-B_box | 32.2 | 2.2e-10 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++ek++ lfC++++ llC++C l +H+ Ht Vang05g00820.1 56 PRCDICQEKRAYLFCQEDRALLCRECDLPIHRAneHT 92 79*****************************768865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.021 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.74E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 9.1E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 7.69E-5 | 51 | 91 | No hit | No description |
PROSITE profile | PS50119 | 10.296 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.87E-10 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 1.0E-8 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKIQCDVCDK MEATIFCPAD EAALCHGCDR TIHHANKLAT KHPRFPLIFP TSKDFPRCDI 60 CQEKRAYLFC QEDRALLCRE CDLPIHRANE HTQKHNRFLL TGVKLSATSL DYASSSTNCT 120 DTLTASEGKN ARSRMNTPRS ISNENLSSSC KVEDNVGSDT GSVSTSSISE YLIETIPGYC 180 FEELLDGSFA PNNGFCKKQN HDHLWEFEEQ DLAQGLRKFQ MGDVMVVPFL KLVVRLIKNL 240 DQLLVKICWE ISSMFRYLNF FLGSVLAFFL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g00820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420507.1 | 0.0 | PREDICTED: B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 1e-60 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S3U3E6 | 1e-162 | A0A1S3U3E6_VIGRR; B-box zinc finger protein 20 | ||||
STRING | XP_007135935.1 | 1e-143 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 3e-59 | DBB family protein |