PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g00580.1
Common NameLR48_Vigan04g253300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 393aa    MW: 43463.5 Da    PI: 6.6765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g00580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10200247455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vang05g00580.1 200 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 247
                     8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.49E-10194251No hitNo description
SuperFamilySSF474596.54E-17194264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17196263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MLHCENTSGN LAGDMTVWER QRARMKWQEE HGYFSAFDAV FSSSSQDSFV LPADSGCALG  60
EVVAQARARP GSMNKPSVHG FDESSSISRT FSCPPALVEP RPTGSSIEKE SSKKRKPEKL  120
HNAKFVTEND TKDKRIKLGA DDEQSKITGS PNSNANTDSN KRETCADTSN SKQNSKASEI  180
QNQKPDYIHV RARRGQATDS HSLAERVRRE KISERMKYLQ DLVPGCNKIT GKAGMLDEII  240
NYVQSLQRQV EFLSMKLAAV NPRLDLSIDD LFEKEVFPCA ANFPNIGMSS DLTNSGYVQF  300
NSPQEMVSYG GLDTVINPPY MGLKRTISAH LSSVPETYLH SSSFTQLLPS SAWEGDFQNV  360
FNLDFDQVRA TSFPSHLSSG LVEAGNHLKM EM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g00580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421043.10.0PREDICTED: transcription factor bHLH63
TrEMBLA0A0L9UHE40.0A0A0L9UHE4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9Z50.0A0A0S3R9Z5_PHAAN; Uncharacterized protein
STRINGXP_007136166.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-58cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]