PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g00340.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 104aa    MW: 11565.3 Da    PI: 8.2371
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g00340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.61.5e-1280103932
            GATA   9 TplWRrgpdgnktLCnaCGlyyrk 32 
                     Tp++Rrgp+g+ +LCnaCGl ++ 
  Vang05g00340.1  80 TPMMRRGPSGPASLCNACGLSWAN 103
                     **********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.6E-979103IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-679102No hitNo description
PfamPF003202.4E-1080103IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MRVLLLRLIL ISQCVETPPQ IQNQNHVVAA EMGCEGEYGS EAHRAASLSR VHRSKSQFIL  60
SKIHESEQDV FHSEIFSKCT PMMRRGPSGP ASLCNACGLS WANR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g00340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-39AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420519.12e-55PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH67e-15GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S3U0822e-49A0A1S3U082_VIGRR; GATA transcription factor 25
STRINGXP_007137337.15e-29(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2429633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.23e-17GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]