PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0599s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 28186.3 Da PI: 6.8581 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.1 | 2.5e-17 | 6 | 66 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ewyfF +rd+ky+ + r+nrat +gyWk+tgkd++v +y+grap+g +tdWvmhey l Vang0599s00010.1 6 SRDTEWYFFGPRDRKYPIEFRTNRATPAGYWKSTGKDTKV---------------YYRGRAPQGIRTDWVMHEYCL 66 4689********************************8766...............789****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.673 | 1 | 102 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-23 | 6 | 73 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-9 | 10 | 66 | IPR003441 | NAC domain |
SuperFamily | SSF54593 | 8.75E-9 | 78 | 202 | IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
CDD | cd07245 | 2.80E-20 | 78 | 197 | No hit | No description |
Gene3D | G3DSA:3.10.180.10 | 4.5E-14 | 79 | 200 | IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
KSFLPSRDTE WYFFGPRDRK YPIEFRTNRA TPAGYWKSTG KDTKVYYRGR APQGIRTDWV 60 MHEYCLDDKE CEDTTGLQNI LGFFPIRRPG SLDFDGAWLF GYGIGIHLLQ VEDPSNIPRK 120 KEINPKDNHI SFQAPFQCER KFVSYHYMKL IACESMGPVE KKLEEMEIEY ARGTVEEGGI 180 KVDQLFFHDP DGFMIEICNC DILPVIPLPS HMVRSCSRMN LQMLQQRQTH QIVKQDSALM 240 LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-16 | 10 | 66 | 70 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0599s00010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-151 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017431843.1 | 1e-100 | PREDICTED: uncharacterized protein LOC108339213 | ||||
TrEMBL | A0A0S3SFC6 | 7e-91 | A0A0S3SFC6_PHAAN; Uncharacterized protein | ||||
STRING | XP_002517606.1 | 1e-74 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 2e-39 | NAC domain containing protein 57 |