PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0537s00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 383aa MW: 41659.9 Da PI: 10.0407 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.2e-14 | 172 | 216 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Vang0537s00020.1 172 PWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 216 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.631 | 84 | 99 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.554 | 165 | 221 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-16 | 167 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-16 | 168 | 219 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-10 | 169 | 219 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 171 | 216 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-11 | 172 | 216 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-9 | 172 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
HKHQCHHHTF NTSTLPKQNS LYITQTSLCL FLSLHHKHKP NNTLSSFKPF ISSPYIITSI 60 NLPHTYHIHI AIFIAWTVEM SRTCSQCGNN GHNSRTCTDG GAAVSGGSSP RESGFMLFGV 120 RVTEGISSFR KSASMNNLSQ YDADSNTADA GYASDDVVHA SGRARERKRG VPWTEEEHRL 180 FLLGLHKVGK GDWRGISRNF VKTRTPTQVA SHAQKYFLRR HNQNRRRRRS SLFDITTDTV 240 MESSTIMEEE QVQQETAALP IPAAYPPSHY GGLPGAGFPM SLSPVVLPAS SERLAKPIRP 300 TPILPVPPSS KMASLNLKEK ASPTNLIEPL PLSLNLPSPT PRSQDQSPAS SDHSSPSSSS 360 SAFQVISAGK FGGGGDSIIS VA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00630 | PBM | Transfer from PK17526.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0537s00020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027914816.1 | 0.0 | transcription factor MYB1R1 | ||||
TrEMBL | A0A0S3T2U3 | 0.0 | A0A0S3T2U3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157550.1 | 1e-168 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5338 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 3e-77 | MYB_related family protein |