PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0522s00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21858.4 Da PI: 10.1856 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.3 | 3.4e-12 | 73 | 115 | 2 | 47 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +y+GV++++ + +++AeIr p+++g r++lg+f+ a e aka++ Vang0522s00080.1 73 HYRGVHQRP-WVKFAAEIRNPNKRG--SRVWLGTFDIAIEVAKAYD 115 8********.**********96655..******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.26E-22 | 72 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-24 | 72 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-7 | 73 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 73 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-19 | 73 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-15 | 73 | 132 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-7 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-7 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MTTRSESVTP GSKPQIIDLD TPNPLTSLHK KPQLNWKPSL QIFLPKKAKW IIFGKPDPNL 60 TVVLLENQPE KKHYRGVHQR PWVKFAAEIR NPNKRGSRVW LGTFDIAIEV AKAYDCVGFR 120 LRDSKAILNF SLEAGMVSGV VEAEGERKRQ REEKEVEEVK SVVKKEKTME QEVNCFREMP 180 LTPLTPISNL I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 72 | 132 | 4 | 64 | ATERF1 |
3gcc_A | 1e-23 | 72 | 132 | 4 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0522s00080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409545.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | O80341 | 3e-42 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0L9TQV8 | 4e-75 | A0A0L9TQV8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R5G2 | 4e-75 | A0A0S3R5G2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA17G15460.1 | 3e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-40 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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