PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g17760.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 855aa    MW: 92019 Da    PI: 7.9533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g17760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.5e-16637683455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Vang04g17760.1 637 VHNLSERRRRDRINEKMRALQELVPNC-----NKADKASMLDEAIEYLKTLQ 683
                     5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.58394128IPR002885Pentatricopeptide repeat
PfamPF015350.4696125IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.39159189IPR002885Pentatricopeptide repeat
PfamPF015350.0034164184IPR002885Pentatricopeptide repeat
PfamPF130411.9E-13190235IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.364190224IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-8192226IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.272225259IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.280.101.2E-20630691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-20631694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.266633682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.20E-17636687No hitNo description
PfamPF000102.9E-13637683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17639688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MIIMKLASLI RSSSNQNGVP NLHWFSSVPD IKLHLDKAAK LKNLKHATQI HSQIVTTNQA  60
SLGNINSLLV VYAKCGSIKH AVLLFGTSPG ASTSVVTWTT LITQLSHFNK PFQALTSFNL  120
MRTTGIYPNH VLSACAGLVE LGFGKQVHGS IVKRGLVGLV YVKNSLVDMY CKCGLFEDAT  180
KLFCGGGERD VVTWNVMITG CVHSQNFEQA CTFFQAMIRE GVEPDEASYS SLLHASASIA  240
ALAQGSLIHC HVLKTGHMKN ACVSSSLVTM RSGFLPILET SINCKGDLIP KEMNNNTCAA  300
DQSYTSNNDL FELVWEKGQI SMQGQSFRAR KSPNCRTLPS HCLPSHTPLG GYAKDNNTTI  360
TRMGNSEFFN ELCGVTMNEP SASNGFSLLD RRNSCSKVFR DTHKNTPFAS VRSKIVDIAE  420
NNTNNVPSPS SGFSGLKMEK QGSVACSNSS TMMNFSHFAK PVAIVKANLE NIGLASRSGS  480
VGIKIKGVAA TVATNPAEST KVELFGEFSK KAGTQSHQVT EPKPLEQDGA VSTKCDPSCK  540
DVCRIDDTSN LVVGESVNKG KEAVEKNVEP AVVSSSVCSG NGAERGSKDP NQNLKRKSID  600
TDDFESQSED VEEESVGVEK EVPAPQIGAK RHRSAEVHNL SERRRRDRIN EKMRALQELV  660
PNCNKADKAS MLDEAIEYLK TLQLQLQVMS MGTGLCMPAM MLPPGIQHMH AAHMGPFCPI  720
GVGMQMRLRV GCGMGMIDGN DETSGFPMAH VAQMQGAKLP IAHAPGSTAL HGMPNGQVFG  780
VLSQGHHMPM PHAPIFSFPG ESFMEPSTLG LNACGTALTE NVGSVSACNL KDPMPHVNSQ  840
HAQNTNIPDV NTRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-452027212337PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1641646ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g17760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417264.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A0S3RZZ50.0A0A0S3RZZ5_PHAAN; Uncharacterized protein
STRINGGLYMA19G41261.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-43phytochrome interacting factor 3