PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g17720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 330aa MW: 37723.8 Da PI: 7.0311 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00073 | 189 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H Vang04g17720.1 189 FYCDLCNKQYKLAMEFEAHLSSydH 213 78*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 6.2E-19 | 92 | 137 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.87 | 94 | 139 | IPR000467 | G-patch domain |
Pfam | PF01585 | 2.5E-16 | 95 | 135 | IPR000467 | G-patch domain |
SuperFamily | SSF57667 | 5.7E-5 | 172 | 224 | No hit | No description |
Pfam | PF12171 | 1.9E-5 | 189 | 216 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MPHSPFDHEN FTIAGVPSST YPFLSSSKMD YRWTNGRLDT GGRDRRQSKR EQAYQDSLVE 60 DLSEDFRLPI NHRPTENVDL DNVEQASLDT HLTSSNIGFK LLQKMGWKGK GLGKDEQGIT 120 EPIKSGIRDP RLGVGKQEED DFFTAEENIQ RKKLDVELEE TEEHVKKREV LAEREQKIQT 180 EVKEIRKVFY CDLCNKQYKL AMEFEAHLSS YDHNHRKRFK QMKEMHGGGS RDDRQKREQQ 240 RQEKEMANAD AQKQQRLQLQ QDSGSGTVSS ESRTATALTD QEQRNTLKFG FSSKGSGSKI 300 TFGAKKQNVA KKQSAPPISS IFSNDSDEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g17720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096374 | 0.0 | BT096374.1 Soybean clone JCVI-FLGm-15D7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419572.1 | 0.0 | PREDICTED: G patch domain-containing protein 8 | ||||
Refseq | XP_017419573.1 | 0.0 | PREDICTED: G patch domain-containing protein 8 | ||||
TrEMBL | A0A0S3S031 | 0.0 | A0A0S3S031_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163288.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5977 | 24 | 28 |