PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g17410.1
Common NameLR48_Vigan03g272000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 476aa    MW: 52864.5 Da    PI: 8.3701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g17410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14282327454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      hn  E++RR++iN+++ +L+el+P++      K++Ka++L  A+eY+k L
  Vang04g17410.1 282 VHNLSEKKRREKINKKMRTLKELIPNC-----NKVDKASMLDDAIEYLKTL 327
                     6*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.06E-15276332No hitNo description
SuperFamilySSF474594.45E-19276342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.65278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-12282327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-18282336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-16284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MIQDMPDSTR SAMTRSSYSF YDNDFLELVW ENGEVVARGG SSNKSPSIKR TRLNPLYSLE  60
DHLSPLKESD MSSSYQSNAQ DSCHSSQNKN SCKLNEEFEN LLRPAKDSKP VTPGHVFLKS  120
STCHGSSTTQ QTKHYSYPAR MEEIEARKVE KSTKESQGFQ KQTSLTVERS AKPPPPLDEH  180
SEAIGLGIHR HQGQLRYDQT SASEALRAKE KAYNNNNTVC KEPFLASSVC SLGASNDPNV  240
GIRKNEDTDD STYLSDNDEE PENRVKQDRE GNRLKRSRNT EVHNLSEKKR REKINKKMRT  300
LKELIPNCNK VDKASMLDDA IEYLKTLKLQ LQIMSMGSGL WPLMMLPAAA APHMNGPHLS  360
QLVGAGMGFR PPELPVPPLS AITDSRLHQM FGFPNQIPTM PMPHAPFFPV IGNSPTQPHL  420
AATTAPTQHL AKSAASLQVS LPTNLVPLEN ATNQLQNPVS FHPHGISTPF IFPQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g17410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416350.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A0L9U9840.0A0A0L9U984_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S0240.0A0A0S3S024_PHAAN; Uncharacterized protein
STRINGXP_007163252.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-29phytochrome interacting factor 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]