PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g16700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 27644.4 Da PI: 10.8749 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.2e-06 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F ++ L H++ H Vang04g16700.1 38 FRCHYCNRVFANSQALGGHQNAH 60 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.97E-6 | 35 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 35 | 64 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.822 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-5 | 38 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12023 | 2.0E-25 | 198 | 242 | IPR021899 | Protein of unknown function DUF3511 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSDNHKTQSS APKLFGFPLT EQEEFAERKY DDGEDRKFRC HYCNRVFANS QALGGHQNAH 60 KKERQRARRF QIHNHRRSSM PPPSSSLSVT PLTFLTSHAI IRSLPLSIPR ANTKVTFQRS 120 EHCSFLATAH VSVLHCLSSQ YTLSRNFQTL TKALFPPLDM ESYGSGHRRM EVVSGKSHGW 180 SGSRSPDSAQ GSEKPWRFSD PEAKRKKRVA KYKVYGVEGK VKATVKKGLR WIKNKCSQIA 240 HGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g16700.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0L9U981 | 5e-96 | A0A0L9U981_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 8e-16 | C2H2 family protein |