PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g16100.1

Common Name

LR48_Vigan03g287100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 475aa MW: 51924.6 Da PI: 8.0576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g16100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vang04g16100.1 34 FVCEICNKGFQRDQNLQLHRRGH 56 89*******************88 PP
2	zf-C2H2	16.3	2.7e-05	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Vang04g16100.1 110 WKCDKCSKRYAVQSDWKAHQKTC 132 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	33	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.0E-8	33	56	No hit	No description
SMART	SM00355	0.017	34	56	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.5E-5	34	56	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	34	56	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2
SMART	SM00355	67	75	105	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.7E-6	98	131	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.0E-8	105	131	No hit	No description
SMART	SM00355	89	110	130	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MVSCYLLMDM FYEIDPSAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 60 KLRQRTSTEV KKRVYVCPEP SCVHHNPGRA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA 120 VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVNQ GLTSGMPPNL 180 QNQIPDLMST MPLNTSPNTA YDPKNPLKSL PQELVPIPFK SMSMGGGMFS TNAGALFGGP 240 KSMSPSSSSL QLGSNTSSSF NYLQDNKNGG LIAASAQMSA TALLQKAAQM GATASNTINS 300 PMMQKGFVSS TAAPDHVSST RPPYSGAMLQ HNNSYDHFSP QPDLSNMAGV SGGGAFINQL 360 FHKGQEISQV FDTNTAGSAM NDVGMFSQMP LGSDHNPGLM KNVEQEVSNC SGLIHGKDVV 420 EGNPMQPSRF GGSDMTTVHD FLGIGGSTSR VMNHFHHHFP HEDSAAMEEP IWDV*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MVSCYLLMDM FYEIDPSAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  60
KLRQRTSTEV KKRVYVCPEP SCVHHNPGRA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA  120
VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVNQ GLTSGMPPNL  180
QNQIPDLMST MPLNTSPNTA YDPKNPLKSL PQELVPIPFK SMSMGGGMFS TNAGALFGGP  240
KSMSPSSSSL QLGSNTSSSF NYLQDNKNGG LIAASAQMSA TALLQKAAQM GATASNTINS  300
PMMQKGFVSS TAAPDHVSST RPPYSGAMLQ HNNSYDHFSP QPDLSNMAGV SGGGAFINQL  360
FHKGQEISQV FDTNTAGSAM NDVGMFSQMP LGSDHNPGLM KNVEQEVSNC SGLIHGKDVV  420
EGNPMQPSRF GGSDMTTVHD FLGIGGSTSR VMNHFHHHFP HEDSAAMEEP IWDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	106	169	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-35	106	169	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g16100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418855.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-106	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A0L9UAE7	0.0	A0A0L9UAE7_PHAAN; Uncharacterized protein
STRING	XP_007163083.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-104	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]