PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g15980.2 | ||||||||
Common Name | LR48_Vigan03g288600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CO-like | ||||||||
Protein Properties | Length: 345aa MW: 38388.1 Da PI: 6.4311 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.1 | 3.1e-07 | 9 | 52 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ +++ + l+C+ ++ lC +C e H+ Ht++ Vang04g15980.2 9 ARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTnqlfskHTRT 52 678******99*********************668888888876 PP | |||||||
2 | zf-B_box | 25.8 | 2.2e-08 | 54 | 97 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 C+ +++ ++++ C ++ + +C++C e+H + H+++pl Vang04g15980.2 54 LCDACDDSPATILCSTDTSVFCQNCDWEKH-NpslsdslHQRRPL 97 7*****************************.54899999988775 PP | |||||||
3 | CCT | 60.3 | 6.3e-21 | 298 | 340 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ allRYk+K+ktR+++K+irYesRK++AesR RvKGrF+k Vang04g15980.2 298 RDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKM 340 899**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.594 | 7 | 54 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-14 | 7 | 54 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-6 | 8 | 52 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.74E-7 | 10 | 54 | No hit | No description |
PROSITE profile | PS50119 | 9.741 | 50 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.00E-5 | 54 | 97 | No hit | No description |
Pfam | PF00643 | 3.5E-6 | 54 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.27 | 55 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.485 | 298 | 340 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.3E-16 | 298 | 340 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MTAEAPKPAR PCDYCGHSMA VLYCRADSAK LCFSCDREVH STNQLFSKHT RTLLCDACDD 60 SPATILCSTD TSVFCQNCDW EKHNPSLSDS LHQRRPLEGF TGCPSVSELL SVVGFGDLSK 120 KSLLSSPQGS AADGFLGCEI EGFSDLFVWD APSVVTLDDL ISSSASSHSF QAMEVPPLPK 180 NRKAACGRHR EEILSQLREL ARSEPLDLEQ YVQPENLSSA FESDVEWHRE MSEPMYQVVP 240 PDPSLRTYTE EVPVKQSTSV GETHTFGDKG GNPSISLNSE TLPTTPKAGA CELTSQERDS 300 ALLRYKQKKK TRRYDKHIRY ESRKVRAESR VRVKGRFAKM EREH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 306 | 312 | QKKKTRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g15980.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419105.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 13-like | ||||
Refseq | XP_017419106.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 13-like | ||||
TrEMBL | A0A0L9UAG0 | 0.0 | A0A0L9UAG0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S0I7 | 0.0 | A0A0S3S0I7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163062.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7055 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 2e-90 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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