PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g15880.1
Common NameLR48_Vigan03g289500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 617aa    MW: 68610.7 Da    PI: 6.9641
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g15880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.93.1e-26100201199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f kvltpsd++++g +++pk++a+e+         ++ s++++ +d++g +W +++iyr++++r++lt+GW+ Fv+a++L +gD+++F   + + 
  Vang04g15880.1 100 FGKVLTPSDTSTHGGFSIPKRHADECfrpldmT-HQTPSQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFV--SGEY 191
                     679***************************953.4456679************************************************..4488 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +e +v+++r+
  Vang04g15880.1 192 GEVRVGIRRA 201
                     889****996 PP
2Auxin_resp83.64.1e-28228309183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+s+F+v+Y+P++ + eF++++++++k++   +s+G+R++m+ + e+s + r++Gt++g + +d++rWp+S+Wr+Lk
  Vang04g15880.1 228 ASHAVATGSMFTVYYHPWTNPFEFIIPLKNYLKSTVPDYSIGTRVQMQCDVEESLR-RYAGTIIGNEVIDSIRWPGSEWRCLK 309
                     789*************************************************9865.67**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-3691230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-3993211IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-2399200No hitNo description
PROSITE profilePS5086312.943100202IPR003340B3 DNA binding domain
PfamPF023626.1E-24100201IPR003340B3 DNA binding domain
SMARTSM010192.2E-23100202IPR003340B3 DNA binding domain
PfamPF065071.9E-27228309IPR010525Auxin response factor
PROSITE profilePS5174514.077539616IPR000270PB1 domain
SuperFamilySSF542772.16E-5542610No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAMEESGTDD LYTELWRACA GSSVYVAAFT QHQQDGHMEI PVYDLPPKIL CRVACVLLQA  60
ETYTDEVFAQ VTLVPEPRQN HFGLENEDNH VPSRTTTYSF GKVLTPSDTS THGGFSIPKR  120
HADECFRPLD MTHQTPSQEI VAKDLHGFEW HFRHIYRGQP KRHLLTSGWS TFVNAKKLVA  180
GDSCIFVSGE YGEVRVGIRR AIRHHSNASP SSSLISGHSM QLGILASASH AVATGSMFTV  240
YYHPWTNPFE FIIPLKNYLK STVPDYSIGT RVQMQCDVEE SLRRYAGTII GNEVIDSIRW  300
PGSEWRCLKV QWDAIVDAFM HPERVCPWWI EPLESGMEKH IPVLPNPKKA HVLHQRPLPG  360
LNVFAMDDAA AQSSARPVAD RDLQGQDYSG LSTSRALQRP PSTDVIHPSK FSIRGSQFGK  420
ENLNQLPFLM QDILHKSLGR STSLPHEDLS ISSSNLSSLC SESLGWPPSE SRNENDAPLG  480
HLGSCSKYKL FGVNLIDRQP ELPSPQLAGF SKTSSLLSSP PMCVTSGKTC KKCRSVNNRS  540
CTKVLKLGTA LGRAVDLTRF RGYDELIAEL DSMFNFGGSL VNGSSGWHVT CIDDDGDMMF  600
LRDYPWQLST KTNNII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-106833516357Auxin response factor 1
4ldw_A1e-106833516357Auxin response factor 1
4ldw_B1e-106833516357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g15880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417210.10.0PREDICTED: auxin response factor 23-like
RefseqXP_017417211.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A0L9U9U90.0A0A0L9U9U9_PHAAN; Auxin response factor
STRINGXP_007163052.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-117auxin response factor 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]