PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g14960.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 319aa    MW: 36304.6 Da    PI: 6.4263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g14960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.5e-52111401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhP+deel+v+yL++kv++++l+  ++i+e+d+yk++Pw+L++  k+  +e+ewyfF++rd+ky++g r+nra++sgyWkatg+d++++
  Vang04g14960.1  11 LPPGFRFHPSDEELIVHYLRNKVTSSPLPG-SFIAEIDLYKYNPWELQSlcKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDRPIF 104
                     79***************************9.89**************95334444999************************************* PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ + +++g+kk Lvfykgrapkg+ktdW+mheyrl
  Vang04g14960.1 105 TScGMKNIGVKKALVFYKGRAPKGSKTDWIMHEYRL 140
                     9977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-618167IPR003441NAC domain
PROSITE profilePS5100560.82711167IPR003441NAC domain
PfamPF023651.9E-2712140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDKDGNSEIR LPPGFRFHPS DEELIVHYLR NKVTSSPLPG SFIAEIDLYK YNPWELQSLC  60
KALFGEDEWY FFTPRDRKYP NGVRPNRAAA SGYWKATGTD RPIFTSCGMK NIGVKKALVF  120
YKGRAPKGSK TDWIMHEYRL HNSMNSISQQ RRSMRLDEWV LCRVRQKASN TRSNWEETIY  180
EATSQFEEMN ENSNPEAAKN SVHDEYPLLP YILASVSDSI GLVSGSGCGC NDDGKAYASL  240
HDKNTNVISG AEFMAAEGLF NPLKRKNTKE KELELYASLD KKLSEEHDVG NEHDLNKDCN  300
SNNFDHWTSI ILPQELNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-6621776174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g14960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416921.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY425e-77NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0S3RYN70.0A0A0S3RYN7_PHAAN; Uncharacterized protein
STRINGGLYMA19G36421.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-79NAC domain containing protein 25