PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g14470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 28419.6 Da PI: 10.3675 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Vang04g14470.1 44 FECKTCNRKFSSFQALGGHRASH 66 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Vang04g14470.1 92 HECSICGQEFSLGQALGGHMRKH 114 78********************9 PP | |||||||
3 | zf-C2H2 | 13.8 | 0.00017 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Vang04g14470.1 205 HECTICGQEFSLGQALGGHMRRH 227 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.699 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.98E-8 | 44 | 114 | No hit | No description |
SMART | SM00355 | 0.19 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-10 | 44 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 90 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.492 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.067 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.4E-9 | 92 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.21E-5 | 154 | 182 | No hit | No description |
PROSITE profile | PS50157 | 10.097 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.43 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.8E-10 | 156 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.26E-6 | 202 | 228 | No hit | No description |
PROSITE profile | PS50157 | 9.785 | 205 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.085 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-9 | 205 | 229 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVAMKRQRGN EGSENLDLAK CLMLFSCPEE SNKAQEKGFG SLEFECKTCN RKFSSFQALG 60 GHRASHKRQK VEGEELKEQG KSLSLWSKPK MHECSICGQE FSLGQALGGH MRKHRGISNE 120 GFVPIPSIDQ VIAKFPVLKR SNSTRLQRKH VEDVEFECKT CKRKFSSFQA LGGHRASHKR 180 SKLEGDELKA QPIGLSLGIR KPKMHECTIC GQEFSLGQAL GGHMRRHRAS INGDFSSVKH 240 VAEVPVLKRS NSTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g14470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417818.1 | 1e-101 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | A0A0L9U7Y7 | 1e-100 | A0A0L9U7Y7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162678.1 | 4e-94 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-31 | C2H2 family protein |