PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g14130.1 | ||||||||
Common Name | LR48_Vigan03g208200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29739.8 Da PI: 8.4588 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.1e-13 | 81 | 133 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ + Lr+llP a + kK+s +++ ++ +YI +Lq Vang04g14130.1 81 KKLSHNASERDRRKKVNNLVSSLRSLLPMA--DQTKKMSIPATVSRVLKYIPELQ 133 6789*************************6..48888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.7 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-15 | 81 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.99E-11 | 81 | 137 | No hit | No description |
Pfam | PF00010 | 3.1E-10 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-12 | 81 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-10 | 86 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
LLTAPNKSSS FTMVALFSPI FSPKGWLLEE EPLAYNNSHN LFYKDDASSE YSFPYHFYSP 60 QTQIELEERS IAPSSDPAMV KKLSHNASER DRRKKVNNLV SSLRSLLPMA DQTKKMSIPA 120 TVSRVLKYIP ELQQQVQALT KRKEELLGRI SRQLQGDAVN KESHRKISHH NSSFVVSTTR 180 LNECEAVVHI SCHETHKAPL SEILQCLEND GLFLLDASSS ETFGGRFFYN LHFQVEKTNR 240 LAPEILTEKL LPIYEKQRIF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g14130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418090.1 | 0.0 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A0L9U7C3 | 0.0 | A0A0L9U7C3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RX61 | 0.0 | A0A0S3RX61_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162129.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 5e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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