PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13720.1
Common NameLR48_Vigan03g212300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 211aa    MW: 23759.9 Da    PI: 9.2552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.9e-143985354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++h+e+E+rRR+riNs ++eLr+llP +      K +Ka+ L k+v+ +k+L
  Vang04g13720.1 39 KNHKEAEKRRRERINSHLDELRTLLPCN-----SKTDKASLLAKVVQRVKEL 85
                    58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.9673685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-113985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.11E-123988No hitNo description
Gene3DG3DSA:4.10.280.103.0E-144094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-134291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.7E-5125189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MHQHHTLSNN SSSNHFYPFH VSQITPTPSH HDRALAAMKN HKEAEKRRRE RINSHLDELR  60
TLLPCNSKTD KASLLAKVVQ RVKELKQQTS EITELETVPS ETDEITVLST GGDYGSDGRL  120
VFKASLCCED RSDLIPDLIE ILNSLHLKTL KAEMATLGGR TRNVLVVAAD KEHSIESINF  180
LQNSLKSLLD RSNSSDRSKR RRGLDRRLMS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g13720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417758.11e-152PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-76BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0L9U7N51e-151A0A0L9U7N5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RWZ61e-151A0A0S3RWZ6_PHAAN; Uncharacterized protein
STRINGXP_007162071.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]