PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g13640.2

Common Name

LR48_Vigan03g205000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 278aa MW: 30499 Da PI: 7.8682

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g13640.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.6e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Vang04g13640.2 46 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.884	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-17	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-26	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	9.8E-25	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MYHAKKFPSA SMVPYKSQGG AEQIANVEVL GGSAGKNATP AEGSGKQRLR WTSDLHDRFV 60 DAITQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPAD GKDSKDEKRN 120 SGDSFSGADS SPGMPINDAL RMQMEVQKRL HEQLEVQKQL QMRIEAQGKY LQKIIEEQQK 180 LGNTLTTSET LPLSHDKQTH PHSEASGSSD ALASTLSPRK KQRIDDGSKD GFTASHVRKT 240 EQKNECNVGQ LDPNLYDDAG FGFDLETNKD EHKESGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g13640.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ007311	0.0	HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017416066.1	0.0	PREDICTED: myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	1e-70	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0L9U788	0.0	A0A0L9U788_PHAAN; Uncharacterized protein
STRING	XP_007161823.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-73	G2-like family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]