PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g13640.1 | ||||||||
Common Name | LR48_Vigan03g205000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 293aa MW: 32196 Da PI: 7.8677 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84 | 1.6e-26 | 46 | 115 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse...............kAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG++ +AtPk +l++m+v+gLt++hvkSHLQkYRl Vang04g13640.1 46 KQRLRWTSDLHDRFVDAITQLGGPDsgkenaiwellvrlsRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 115 79*********************965555555555555558****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 44 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-13 | 45 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-8 | 46 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-6 | 48 | 114 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.0E-11 | 82 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 1.1E-24 | 149 | 195 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MYHAKKFPSA SMVPYKSQGG AEQIANVEVL GGSAGKNATP AEGSGKQRLR WTSDLHDRFV 60 DAITQLGGPD SGKENAIWEL LVRLSRATPK GVLRVMGVPG LTIYHVKSHL QKYRLAKYLP 120 ESPADGKDSK DEKRNSGDSF SGADSSPGMP INDALRMQME VQKRLHEQLE VQKQLQMRIE 180 AQGKYLQKII EEQQKLGNTL TTSETLPLSH DKQTHPHSEA SGSSDALAST LSPRKKQRID 240 DGSKDGFTAS HVRKTEQKNE CNVGQLDPNL YDDAGFGFDL ETNKDEHKES GQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-19 | 45 | 118 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g13640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ007311 | 0.0 | HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416066.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 2e-66 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0L9U788 | 0.0 | A0A0L9U788_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161823.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13013 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 9e-69 | G2-like family protein |
Publications ? help Back to Top | |||
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