PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g13610.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 247aa MW: 27269.6 Da PI: 9.3377

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g13610.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.2	2.7e-16	176	221	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR+RK+a+++eLe kv Le+eN++L+ ++e Vang04g13610.1 176 RRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLRRQNE 221 79****************************************6554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-14	169	221	No hit	No description
SMART	SM00338	1.4E-13	172	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.588	174	219	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.40E-23	176	221	No hit	No description
Pfam	PF00170	5.1E-13	176	221	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.44E-11	176	222	No hit	No description
PROSITE pattern	PS00036	0	179	194	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGSQGGAIQE PKNGSLARQG SLYNLTLDEV HNQLGNLGKP LGSMNLDELL KGVWTAESGT 60 DAYMQQGQVA YAGSSLNPQG SLTLCGDLSK KTIDEVWRDM QQKKSVSQER ERQPTLGEMT 120 LEDFLVKAGV TTDPFPNDDR YSEAMPSSLM GALSDSQSAG RKRAASGNVV EKTVERRQKR 180 MIKNRESAAR SRARKQAYTQ ELEIKVSRLE EENERLRRQN EIEKVLPSAP PPDPKHQLRR 240 TSSAPL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g13610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016161875.2	1e-113	LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-101	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A371F566	1e-115	A0A371F566_MUCPR; ABSCISIC ACID-INSENSITIVE 5-like protein 2 (Fragment)
STRING	Cagra.0578s0014.1.p	1e-101	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	7e-91	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]