PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13430.5
Common NameLR48_Vigan03g168800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 188aa    MW: 20775.8 Da    PI: 4.4342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13430.5genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.3e-153451156
             AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vang04g13430.5  3 AWGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 45
                    6**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.928152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-26153IPR001471AP2/ERF domain
SMARTSM003802.4E-28158IPR001471AP2/ERF domain
CDDcd000186.99E-28154No hitNo description
SuperFamilySSF541718.5E-18253IPR016177DNA-binding domain
PfamPF008479.3E-10345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRAWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAL AIKGHSAYLN FPNLAQDLPR  60
PITTSPKDIQ AAAAKAATTF FDDGKRCEAE KDEQNHTEQA SSSTLCMENT EVEQVQAEEA  120
SPSTLSMDTT QGSSTSHSTA DDDTLFDLPD LFPDGNNGLF FSYSSSWHLC AADSGFRLEE  180
QFLWENY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g13430.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418094.11e-140PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-57ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9U6A81e-139A0A0L9U6A8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVU01e-139A0A0S3RVU0_PHAAN; Uncharacterized protein
STRINGXP_007140776.11e-111(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]