PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13430.1
Common NameLR48_Vigan03g168800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 259aa    MW: 28149.5 Da    PI: 4.7571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1883134156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vang04g13430.1  83 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 134
                     57*****998.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.26E-3283143No hitNo description
PfamPF008472.8E-1383134IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2184142IPR016177DNA-binding domain
PROSITE profilePS5103223.24884141IPR001471AP2/ERF domain
SMARTSM003802.0E-3784147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3184142IPR001471AP2/ERF domain
PRINTSPR003672.7E-108596IPR001471AP2/ERF domain
PRINTSPR003672.7E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MESDAGENLS MTISTTTTTT TTITSSSPSS SSSSASSTSS SNSCTKQDSQ TSPPDDSTTA  60
QNQNTPNKEC KKRQRNGDDN KHPSYRGVRM RAWGKWVSEI REPRKKSRIW LGTYPTAEMA  120
ARAHDVAALA IKGHSAYLNF PNLAQDLPRP ITTSPKDIQA AAAKAATTFF DDGKRCEAEN  180
TEVEQVQAEE ASPSTLSMDT TQGSSTSHST ADDDTLFDLP DLFPDGNNGL FFSYSSSWHL  240
CAADSGFRLE EQFLWENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17821421273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g13430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418094.11e-152PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-70ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9U6A81e-151A0A0L9U6A8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVU01e-151A0A0S3RVU0_PHAAN; Uncharacterized protein
STRINGXP_007140776.11e-130(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]