PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g13430.1 | ||||||||
Common Name | LR48_Vigan03g168800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28149.5 Da PI: 4.7571 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 83 | 134 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Vang04g13430.1 83 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 134 57*****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.26E-32 | 83 | 143 | No hit | No description |
Pfam | PF00847 | 2.8E-13 | 83 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 84 | 142 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.248 | 84 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 84 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 84 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MESDAGENLS MTISTTTTTT TTITSSSPSS SSSSASSTSS SNSCTKQDSQ TSPPDDSTTA 60 QNQNTPNKEC KKRQRNGDDN KHPSYRGVRM RAWGKWVSEI REPRKKSRIW LGTYPTAEMA 120 ARAHDVAALA IKGHSAYLNF PNLAQDLPRP ITTSPKDIQA AAAKAATTFF DDGKRCEAEN 180 TEVEQVQAEE ASPSTLSMDT TQGSSTSHST ADDDTLFDLP DLFPDGNNGL FFSYSSSWHL 240 CAADSGFRLE EQFLWENY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 82 | 142 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g13430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418094.1 | 1e-152 | PREDICTED: ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 2e-70 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0L9U6A8 | 1e-151 | A0A0L9U6A8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RVU0 | 1e-151 | A0A0S3RVU0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140776.1 | 1e-130 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-56 | ERF family protein |
Publications ? help Back to Top | |||
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