PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g12720.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 367aa    MW: 40782.7 Da    PI: 7.8998
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g12720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.7e-4176153178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  Vang04g12720.1  76 CCSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 153
                     6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-3370138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.97574151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-3875156IPR004333Transcription factor, SBP-box
PfamPF031107.6E-3177150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
LLVMDWDGKE FAWDPRGLEL ANGEGQRNEA ASVDLRLSEE KSLPDVAKDP RDSKTVSSPS  60
GSSKRSRLQN GSQNMCCSVD GCTSDLSDCR EYHRRHRVCE KHSKTPVVLV GGKQQRFCQQ  120
CSRFHSLGEF DEVKRSCRKR LDGHNRRRRK PQPPSLFMAA EKFMYNYKGP RILHFGSPET  180
YVNPIMRSMW SATAKTGAES GYDPPRLLYR IDKHKQDKGH PLWQENDPIV SNANGAILGA  240
PICQPIHGTI TPSTGGKSSR KHSSDAKPGS FDSGCALYLL STLQSQSPES SMVQSSITCP  300
MQSPSGSVHF DTVNEYAYSE TEKDKPSGQV LVLDNTTNLH YNGMLQMGLD GLVENDDPLT  360
LPFLWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-28771501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133150KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g12720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416211.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_017416212.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_017416213.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_017416214.10.0PREDICTED: teosinte glume architecture 1-like
TrEMBLA0A0S3RW050.0A0A0S3RW05_PHAAN; Uncharacterized protein
STRINGXP_007161706.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-42SBP family protein