PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g12090.1
Common NameLR48_Vigan03g158400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 307aa    MW: 32884.8 Da    PI: 9.3433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g12090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-10269296532
                     HHHHHHHHHHHHHHHHHHHHCTSCCC.. CS
             HLH   5 hnerErrRRdriNsafeeLrellPkask 32 
                     hn+ Er+RRd+iN+++ +L++l+P++sk
  Vang04g12090.1 269 HNQSERKRRDKINQRMKTLQKLVPNSSK 296
                     9************************753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-9262296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.191264306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-10268298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7269296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-7269298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSQCVPSWDV DDNPPPPRLS LRSNSSSTAP DVPMLDYEVA ELTWENGQLS MHGLGLPRVP  60
VKLPTIAANK YTWEKPRAGG TLESIVNQAT SLPHRGKPTL NGDGGVYGNF LVPWLDPHAA  120
TANTVTMDAL VPCSKREQSK QGMESVPSTC MVGCSTRVGS CCGNHGAKGQ EMSGRDQSVS  180
GSATFGRDSK HVTLDTCDRE LGVAFTSTSI NSLDNTSSAK HCTKTTTVDD HDSVSHSKPV  240
GENGEDEKKK RGNGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL VPNSSKGSSS  300
GPVRIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277ERKRRD
2273278RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g12090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416203.10.0PREDICTED: transcription factor UNE10
SwissprotQ8GZ382e-75UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0L9U6B00.0A0A0L9U6B0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVI60.0A0A0S3RVI6_PHAAN; Uncharacterized protein
STRINGXP_007140812.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]