PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g12030.1 | ||||||||
Common Name | LR48_Vigan03g158900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 23827.7 Da PI: 7.9714 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H Vang04g12030.1 4 HKCKLCFRSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k+F++ L H +H Vang04g12030.1 90 YKCDTCNKVFRSYQALGGHRASH 112 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 11.5 | 0.00095 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F + L H rtH Vang04g12030.1 144 HECPVCFRVFASGQALGGHKRTH 166 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.6E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.11E-9 | 4 | 26 | No hit | No description |
PROSITE profile | PS50157 | 10.679 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.065 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.11E-9 | 85 | 112 | No hit | No description |
Pfam | PF13912 | 2.0E-13 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.86E-5 | 140 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 142 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.3E-11 | 144 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 144 | 171 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 144 | 166 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 146 | 166 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDKHKCKLCF RSFSNGRALG GHMRSHMMNL PLSKPEEASP RTIQLSFEAE SASSSSSSSD 60 DDEDGDKCLC YGLRENPKRS IRLVDPEFSY KCDTCNKVFR SYQALGGHRA SHKKIKVNVK 120 VDGEEAEVEH RKKSGTCGVE KKIHECPVCF RVFASGQALG GHKRTHVTGS APSTVPSTSA 180 KFGNSFIDLN LPAPIDEDEA SQIENSAVSD AEFVKTR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g12030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417590.1 | 1e-86 | PREDICTED: zinc finger protein ZAT9 | ||||
TrEMBL | A0A0L9U6B4 | 2e-85 | A0A0L9U6B4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RW08 | 2e-85 | A0A0S3RW08_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140808.1 | 3e-85 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-34 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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