PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g11970.2 | ||||||||
Common Name | LR48_Vigan03g159300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||
Protein Properties | Length: 381aa MW: 42805.1 Da PI: 6.8974 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 320.3 | 3.9e-98 | 24 | 379 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+ l++ + ++++ s+t ++ a+k fse+sP+l+f+++ Vang04g11970.2 24 TEQLFKAAELIDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQLGLHS--NANNSSMTFSPT---GLLLKIGAYKSFSEISPVLQFANF 113 689***************************************************..333333444444...4999******************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT+++sp++ ++ el+ t+e+L+++A e++++fe ++l ++l++ Vang04g11970.2 114 TCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHYDEIELSFTRENLKQYAGEINMSFELEILSFESLNSA-S 207 ************************************************************************************966666666.4 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikv 285 + ++ Ea++Vn+ + ++ + +s+ + L++vk+l Pkvvv ++ +d+++++F +++ al+ ys l++sl ++++ + + +++ Vang04g11970.2 208 WPQPLRDCEAVVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFALQSYSGLLESLdAVNV--HPDVLQMI 294 4446799**********988887......777788*********************************************55554..5578899* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E+ +l+++ +++v ++ +e+ +W++ l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr Vang04g11970.2 295 EKYYLQPAMEKLVLGRHGF----KERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLISVSTWR 379 *************987776....68888************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.358 | 1 | 359 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-95 | 24 | 379 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
LQEHHQLLPQ PPAKRLNCGP KAITEQLFKA AELIDAGNLE LAHGILARLN HQLSPFGRPF 60 QRAAFYFKEA LQLGLHSNAN NSSMTFSPTG LLLKIGAYKS FSEISPVLQF ANFTCNQALL 120 EAVEGFDRIH IIDFDIGFGG QWSSFMQELA LRNGGAPELR ITAFVSPSHY DEIELSFTRE 180 NLKQYAGEIN MSFELEILSF ESLNSASWPQ PLRDCEAVVV NMPIGSFSSY PSYLPLALRF 240 VKQLMPKVVV TLDRSCDRTD APFPQHLNFA LQSYSGLLES LDAVNVHPDV LQMIEKYYLQ 300 PAMEKLVLGR HGFKERTLSW KNLLLSSGFS PLTFSNFTES QAECLVQRTP GKGFHVEKRQ 360 SSLVLCWQRK DLISVSTWRC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-31 | 29 | 378 | 24 | 377 | Protein SCARECROW |
5b3h_D | 1e-31 | 29 | 378 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g11970.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418938.1 | 0.0 | PREDICTED: scarecrow-like protein 22 | ||||
Refseq | XP_017418939.1 | 0.0 | PREDICTED: scarecrow-like protein 22 | ||||
Swissprot | O81316 | 1e-150 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A0L9U614 | 0.0 | A0A0L9U614_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RVM1 | 0.0 | A0A0S3RVM1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A151RP96 | 0.0 | A0A151RP96_CAJCA; Scarecrow-like protein 6 (Fragment) | ||||
STRING | XP_007140802.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-137 | GRAS family protein |
Publications ? help Back to Top | |||
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