PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g10180.2
Common NameLR48_Vigan252s001100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 68aa    MW: 7935.06 Da    PI: 11.5497
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g10180.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.22.1e-141861548
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48
                    ++ +r+ +NRe+ArrsR RK++ ++ L + v++L +eNk+   +
  Vang04g10180.2 18 RKRKRMTSNRESARRSRMRKQKHLDDLVTQVAQLRKENKQILTT 61
                    6789999*******************************987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.1E-13762No hitNo description
SMARTSM003381.7E-81467IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4381667IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-121865No hitNo description
PfamPF001704.6E-121861IPR004827Basic-leucine zipper domain
CDDcd147024.46E-141967No hitNo description
PROSITE patternPS0003602136IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
LLQNSGSEED LQPVMDQRKR KRMTSNRESA RRSRMRKQKH LDDLVTQVAQ LRKENKQILT  60
TVNITTQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11738RKRKRMTSNRESARRSRMRKQK
23037RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g10180.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-110AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418036.14e-41PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L52e-23BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0L9T8758e-37A0A0L9T875_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SSU28e-37A0A0S3SSU2_PHAAN; Uncharacterized protein (Fragment)
STRINGGLYMA12G04440.13e-36(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.23e-26basic leucine-zipper 44
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]