PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g08810.3

Common Name

LR48_Vigan03g082800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 564aa MW: 63105.6 Da PI: 4.4861

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g08810.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	121.7	9.1e-38	195	562	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL + ea+++g+++la+ +L +s+ asp g++++Rl++y+ + + ++ l+ ++ + + aal+++++ P+ k++h++ Vang04g08810.3 195 HLLEAHGEALEQGQKSLAEVILRCMSQKASPLGESLERLVFYLSQSMTNHGDY--------LKGEAFK-----NYEAALRALYQGLPVGKVAHFA 276 67777889********************************99999887665........5555554.....45568899********** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak 184 a +aIlea+ ++ + vHi+D +++G+QW+++++a+a + ++++T ++ + g + eet+++L ++A+++g++++ + k Vang04g08810.3 277 AVSAILEAMPQDcNSVHIVDSCVGHGFQWVPMIEAIAHMN---KTVKLTSIKWDDDGeglecfsTPSNFEETKRQLCEYAKSCGLKLKVEE---K 365 *****9888********************965...56***9887799999988999***************9987...4 PP GRAS 185 rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadh...nsesFlerflealeyysal 267 +++l e+++++ + gE la n+++ l ++ +es + e++++ +l + ++++ + a n+ +F f le+y al Vang04g08810.3 366 GVKELvaEIKKMNKRGgrGEFLAFNSMIDLPHMGRESSRKQA--LEFVRVAEDLintsgNRGIITFGDGSAYEkvkNNLNFRSFFKAHLEHYQAL 458 455542245555444477***********966655555..77888777764443355699999977432235999************ PP GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslv 359 ++++e+ +p+ e+ri +E+ +l++ i+++ ++ e ++++ e Fk +ls+++ ++++ +l + s r+e +++++lv Vang04g08810.3 459 LEAIESHFPTRFsEARIAMEQLFLQPCISSLDWLQTWE------EMHSGDPLEAEISFKGCQLSKNILMEIREVLGGSEgSYQARIEgQNHNELV 547 ***998755***********9998888877......2333344446788*****************96666788878899* PP GRAS 360 lgWkdrpLvsvSaWr 374 l k+ +L+ +S W+ Vang04g08810.3 548 LEYKGTQLLRFSTWK 562 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.291	167	540	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-35	195	562	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MQQEDMQSPW SFFEGMNSTF ESGVESLGFT VYDHVADCGS YGFTVDDHVA DYGAYGFAVD 60 DDHVDDCGLN TLLSTLEDST SEISSIPFSS SSLFFSNDHV HTQYPINEET LQLPSLMEFD 120 DFDSIMDTEI ASIQGHGYIW ESEGSFFPPQ NLSSEVENAW SPTPSVRSEL STNQASPLTL 180 PHQNMEIENQ VSLPHLLEAH GEALEQGQKS LAEVILRCMS QKASPLGESL ERLVFYLSQS 240 MTNHGDYLKG EAFKNYEAAL RALYQGLPVG KVAHFAAVSA ILEAMPQDCN SVHIVDSCVG 300 HGFQWVPMIE AIAHMNKTVK LTSIKWDDDG EGLECFSTPS NFEETKRQLC EYAKSCGLKL 360 KVEEKGVKEL VAEIKKMNKR GGRGEFLAFN SMIDLPHMGR ESSRKQALEF VRVAEDLINT 420 SGNRGIITFG DGSAYEKVKN NLNFRSFFKA HLEHYQALLE AIESHFPTRF SEARIAMEQL 480 FLQPCISSLD WLQTWEEMHS GDPLEAEISF KGCQLSKNIL MEIREVLGGS EGSYQARIEG 540 QNHNELVLEY KGTQLLRFST WKN*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MQQEDMQSPW SFFEGMNSTF ESGVESLGFT VYDHVADCGS YGFTVDDHVA DYGAYGFAVD  60
DDHVDDCGLN TLLSTLEDST SEISSIPFSS SSLFFSNDHV HTQYPINEET LQLPSLMEFD  120
DFDSIMDTEI ASIQGHGYIW ESEGSFFPPQ NLSSEVENAW SPTPSVRSEL STNQASPLTL  180
PHQNMEIENQ VSLPHLLEAH GEALEQGQKS LAEVILRCMS QKASPLGESL ERLVFYLSQS  240
MTNHGDYLKG EAFKNYEAAL RALYQGLPVG KVAHFAAVSA ILEAMPQDCN SVHIVDSCVG  300
HGFQWVPMIE AIAHMNKTVK LTSIKWDDDG EGLECFSTPS NFEETKRQLC EYAKSCGLKL  360
KVEEKGVKEL VAEIKKMNKR GGRGEFLAFN SMIDLPHMGR ESSRKQALEF VRVAEDLINT  420
SGNRGIITFG DGSAYEKVKN NLNFRSFFKA HLEHYQALLE AIESHFPTRF SEARIAMEQL  480
FLQPCISSLD WLQTWEEMHS GDPLEAEISF KGCQLSKNIL MEIREVLGGS EGSYQARIEG  540
QNHNELVLEY KGTQLLRFST WKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g08810.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417857.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0L9U3V4	0.0	A0A0L9U3V4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RU11	0.0	A0A0S3RU11_PHAAN; Uncharacterized protein
STRING	XP_007140222.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4274	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-12	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]