PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang04g08310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 478aa MW: 53289.1 Da PI: 5.3757 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 51 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + g k r +lg+f ta eAa a+++a+k+++g Vang04g08310.1 51 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 108 79*****998.**********855.55976666************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-13 | 51 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.90E-31 | 51 | 117 | No hit | No description |
PROSITE profile | PS51032 | 21.654 | 52 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 52 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 52 | 117 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.5E-34 | 52 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
LENTLEKWKE YNRQQQLGSR ENGVEVIQKA PAKGSRKGCM RGKGGPQNSD CKFRGVRQRI 60 WGKWVAEIRE PINGKLVGEK ANRLWLGTFS TALEAALAYD EAAKAMYGPS ARLNFPDPSV 120 EPIHSNGSSS SSGCDKKSPS GSSENDGDVE RAESERNLHQ PNEEKPRFSE VGCVADDSIE 180 ELKEMTSGFE QCQTSEECKA ITSKNIKSEI PEESEGIERE LERVLKNSGI GEEDNLLHNE 240 PLDIAMNTGA NYCSSSDAAE HDIVEKSEET RGESVETLKQ CELSCSNHCL GCMHNMLPDS 300 NSKPHSEHFN NDRWLCHSKC LKINHDQSPH EHYRTEHFDD TRTKLKCLEC KLRAHSIHYK 360 TQAPIVGDSN YPSMQGIHMF GSGTVGPIES MSQIDAMNNI NTSRNSLPGF SSGHSRKLCD 420 LSQQLHKLGG CLPEHWNNMQ FADLEVGYDY SFLNPDYDFG LLEEKKLLDV CFPQIGS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 53 | 116 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang04g08310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417707.1 | 0.0 | PREDICTED: uncharacterized protein LOC108328359 | ||||
TrEMBL | A0A0S3RTW4 | 0.0 | A0A0S3RTW4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140202.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40350.1 | 2e-32 | ERF family protein |