PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g08000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 20516.1 Da PI: 6.0575 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00012 | 40 | 77 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +RR+ + + +++Lr++ + + l+Ka+i A +YI +L Vang04g08000.1 40 KRRESLEQTLQQLRDVTNS------TALNKASIIADASKYIEEL 77 7999999999999998655......46**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.15E-6 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-6 | 42 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.979 | 116 | 185 | IPR002912 | ACT domain |
CDD | cd04873 | 2.05E-4 | 122 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
LSKQTDGKGR AEKTNKRREK QNQNQNNNCT KVISMASRDK RRESLEQTLQ QLRDVTNSTA 60 LNKASIIADA SKYIEELKQK VEGLNSELGI TESSSNSQID ELPAVTVKTL KKGFLINVLL 120 EKNSPGMLVS VLEAFEELGL DVLDARVSCE DSFQLEAVGR ESHKNDSVDA QVVKQAVLQA 180 IKKED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g08000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092309 | 1e-179 | BT092309.1 Soybean clone JCVI-FLGm-10J13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497567.2 | 1e-127 | transcription factor SCREAM2-like | ||||
TrEMBL | A0A1S3TUY6 | 1e-125 | A0A1S3TUY6_VIGRR; transcription factor SCREAM2-like | ||||
STRING | XP_007140138.1 | 8e-97 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF724 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 3e-12 | bHLH family protein |