PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g05870.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 379aa    MW: 41272.6 Da    PI: 10.0498
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g05870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA972.1e-30168224158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RRq+Rak+  ++kl +k rkpy+heSRh hA+rRpRg+gGrF
  Vang04g05870.1 168 DGPIYVNAKQYHGIIRRRQSRAKAVLHHKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 224
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-34166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.737167227IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.6E-27170224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.3E-23170192IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.3E-23201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
LNKNLRNHLL GAHMAMQTVY LKEHEGNAPN SVGALSSAAS APWWSAFGSQ PVHGVESCGQ  60
MKPFSLELPN CINHHAANKP SARGAEQVLG KGHTTQFTIF PDDAQTLQTT ISLQPSLADS  120
HSRFEIGFSQ PMICAKYPYT DQFYGLFSAY APQISGRIML PLNMTSDDGP IYVNAKQYHG  180
IIRRRQSRAK AVLHHKLTKR RKPYMHESRH LHAMRRPRGC GGRFLNTRKS GNGNGKTGNG  240
VHETVGERFD SSGSQSSEFL QSEAGTLNSS KETNGSSPNI SGSEVTSMYS RGGLDRFSLN  300
HFGSSVHTLA DMIDGGRGMI IPPKWAAAAG NCCNLKDRPN IWSRQFIPGS YFGNPSLAHT  360
LAIHPWLMVT LGNSSLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-16170229463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A2e-16168225260HAPB protein
4g92_A2e-16168225260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182201RRRQSRAKAVLHHKLTKRRK
2182202RRRQSRAKAVLHHKLTKRRKP
3183202RRQSRAKAVLHHKLTKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g05870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494812.10.0nuclear transcription factor Y subunit A-10
RefseqXP_014494813.10.0nuclear transcription factor Y subunit A-10
RefseqXP_022635014.10.0nuclear transcription factor Y subunit A-10
RefseqXP_022635015.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A1S3TM170.0A0A1S3TM17_VIGRR; nuclear transcription factor Y subunit A-10
STRINGXP_007162983.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-49nuclear factor Y, subunit A10