PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g05590.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 98aa    MW: 11022.3 Da    PI: 6.5189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g05590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.0001222631854
                    HHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54
                    +  ++Lr+l+P+ +s          +s + +L+++++YI+sL
  Vang04g05590.1 22 ELVSKLRQLVPEiRSnqdtDFFTMQVSASKVLQETCNYIRSL 63
                    55689*******98776654444569999***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.722463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-7781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-7982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSRRSRQHS GSTRISDDQI IELVSKLRQL VPEIRSNQDT DFFTMQVSAS KVLQETCNYI  60
RSLHREVSDL SERLSQLLTT IDADSAEAGI IRSLLNQ*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g05590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-100AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534454.11e-51transcription factor PRE6
RefseqXP_007139582.11e-51hypothetical protein PHAVU_008G041800g
RefseqXP_014497381.11e-51transcription factor PRE6
RefseqXP_017418102.11e-51PREDICTED: transcription factor PRE6-like
RefseqXP_028180391.11e-51transcription factor PRE6-like
SwissprotQ9LJX13e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0L9U2593e-50A0A0L9U259_PHAAN; Uncharacterized protein
TrEMBLA0A0R0ICN43e-50A0A0R0ICN4_SOYBN; Uncharacterized protein
TrEMBLA0A0S3RS213e-50A0A0S3RS21_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TUB13e-50A0A1S3TUB1_VIGRR; transcription factor PRE6
TrEMBLA0A371E3303e-50A0A371E330_MUCPR; Transcription factor PRE5
TrEMBLA0A445J5C53e-50A0A445J5C5_GLYSO; Transcription factor PRE5
TrEMBLV7B5373e-50V7B537_PHAVU; Uncharacterized protein
STRINGGLYMA09G37370.15e-51(Glycine max)
STRINGXP_007139582.15e-51(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-39bHLH family protein