PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g05580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 28610.3 Da PI: 7.505 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 36 | 88 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Vang04g05580.1 36 KKRLNLEQVKALEKSFELGNKIEPERKVQLAKALGLQPRQIAIWFQNRRARWK 88 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123 | 1.5e-39 | 34 | 123 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+ eqvk+LE+sFe +k+eperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEk+yeaLk++++a k++n+ L++++++L++e Vang04g05580.1 34 EKKKRLNLEQVKALEKSFELGNKIEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKADNDVLKSQNQKLQAE 123 69*************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-19 | 29 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 33 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.64E-15 | 35 | 91 | No hit | No description |
Pfam | PF00046 | 2.3E-15 | 36 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-19 | 38 | 93 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.2E-6 | 61 | 70 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.2E-6 | 70 | 86 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.9E-10 | 90 | 123 | IPR003106 | Leucine zipper, homeobox-associated |
Gene3D | G3DSA:1.20.5.170 | 7.4E-4 | 94 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLKRSMSFSG IENKCDEVNG DDELSDDGNF QCGEKKKRLN LEQVKALEKS FELGNKIEPE 60 RKVQLAKALG LQPRQIAIWF QNRRARWKTK QLEKEYEALK KQFEAAKADN DVLKSQNQKL 120 QAEGNMNLIT DQNLGVSVTK LFFLILIQIS VLQAVKSRGW CENGIISLKK ETEGSWSNGS 180 DNSSDIHLEL SRAPIMNNAT SCQAPFPTSI TQILQYSSKP DFHDDDFCNV IHNAAQQTFW 240 PWPGQQSHHF H* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 90 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g05580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417565.1 | 1e-160 | PREDICTED: homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A0L9U265 | 1e-158 | A0A0L9U265_PHAAN; Uncharacterized protein | ||||
STRING | XP_007139587.1 | 1e-143 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 5e-55 | homeobox 3 |