PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g05040.1 | ||||||||
Common Name | LR48_Vigan03g030100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 18547.6 Da PI: 6.6897 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.4e-18 | 59 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr++ g+++AeI+dp+ k+ r++lg+++t+eeAa a+++a+ k++g Vang04g05040.1 59 TRYKGVRRRA-HGKFAAEIKDPN---KSNRVWLGTYDTEEEAALAYDNAAFKIRG 109 68*****887.8*********93...369************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-14 | 59 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.77E-29 | 59 | 119 | No hit | No description |
PROSITE profile | PS51032 | 22.379 | 60 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 60 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-33 | 60 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 99 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MDTYNGINAT SEFDMTFLDT IEHYMVHDGL NDNNNVFVSN EDWFSEKGDK AEEVVPRGTR 60 YKGVRRRAHG KFAAEIKDPN KSNRVWLGTY DTEEEAALAY DNAAFKIRGS KAKLNFPHLI 120 PPLDEPTTTI DQSPSSSSST SQDPSKKRKG LAGLLNKLAH EKNRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 57 | 117 | 2 | 63 | ATERF1 |
3gcc_A | 4e-22 | 57 | 117 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g05040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416403.1 | 1e-121 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q40476 | 4e-29 | ERF1_TOBAC; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0L9U2A5 | 1e-120 | A0A0L9U2A5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007139637.1 | 2e-71 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21227 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 9e-29 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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