PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g03070.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 387aa MW: 43059.3 Da PI: 9.5384

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g03070.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.4	1.8e-32	82	196	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ + s+ ++ +++++s s+ Vang04g03070.1 82 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLpiipsvnnftlgypSAATS---NEAANSHSH 173 689*************************************************************5555555554433311111...111122222 PP TCP 83 snsssg....................k 89 s + + Vang04g03070.1 174 S----QpneqllninssihwqgsdqnS 196 2....1122243444444454322220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.4E-30	84	212	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.337	84	142	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MVPWNRILTS IKWKDKTLHL ATNNEIHKIM IKSPKEVDFA LKQEGGHSQT ISDPEKEKAS 60 SSSAAQWPRL KDPRIVRVSR AFGGKDRHSK VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG 120 LSQPSKVVDW LLNAAKHEID ELPPLPIIPS VNNFTLGYPS AATSNEAANS HSHSQPNEQL 180 LNINSSIHWQ GSDQNSSWKL KRKEVSGEMI STDKASWINR SEEDKQGSNN EGPSTHVMPN 240 NLLPRVNHPS FLGLLNTMPH GYHWEASAGD VSHPQLENNG FSNQTDIHGI NVVPFPTSTL 300 SLSTRNSQIL LCPPGAAQPY FPSHFTAMDM DQRQINHYQM LSSGSQNPLA NSLNHSFSLA 360 MMSHKPLHSP NSSKSPSHKD QDFPSK*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MVPWNRILTS IKWKDKTLHL ATNNEIHKIM IKSPKEVDFA LKQEGGHSQT ISDPEKEKAS  60
SSSAAQWPRL KDPRIVRVSR AFGGKDRHSK VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG  120
LSQPSKVVDW LLNAAKHEID ELPPLPIIPS VNNFTLGYPS AATSNEAANS HSHSQPNEQL  180
LNINSSIHWQ GSDQNSSWKL KRKEVSGEMI STDKASWINR SEEDKQGSNN EGPSTHVMPN  240
NLLPRVNHPS FLGLLNTMPH GYHWEASAGD VSHPQLENNG FSNQTDIHGI NVVPFPTSTL  300
SLSTRNSQIL LCPPGAAQPY FPSHFTAMDM DQRQINHYQM LSSGSQNPLA NSLNHSFSLA  360
MMSHKPLHSP NSSKSPSHKD QDFPSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-18	89	143	1	55	Putative transcription factor PCF6
5zkt_B	6e-18	89	143	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g03070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417111.1	0.0	PREDICTED: transcription factor TCP17-like
Refseq	XP_017417112.1	0.0	PREDICTED: transcription factor TCP17-like
TrEMBL	A0A0S3RRW0	0.0	A0A0S3RRW0_PHAAN; Uncharacterized protein
STRING	XP_007132732.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	6e-41	plastid transcription factor 1