PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g02850.1
Common NameLR48_Vigan03g002600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 343aa    MW: 38290.2 Da    PI: 4.8023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g02850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.16.4e-184796255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Vang04g02850.1 47 RSKHSETEQRRRSKINERFQVLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 96
                    899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-2344116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-2044122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.2954595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-1747100No hitNo description
PfamPF000102.6E-154796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1351101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MARSAKGHQD ELEDDEEEEF LTANTSTSLN KVKVDEPSTG KRGNTHRSKH SETEQRRRSK  60
INERFQVLRD LIPQNDQKRD KASFLLEVIE YIQFLQDKLQ IYEKSYEGWS QEPTKLIPWR  120
NPHAPAENTT DPSQSIQNGS VDEKNNSASP LFPGNVPNPM ESDFSMLTVQ KGHLPGSSTE  180
AVPLTMQMRL DMFDPVVSSG MATQHLQESV SNVDMHSHTQ PQLWLDKSNK GNYILPHDST  240
MKEQEELVIE SGSDSISSAY SQGILDTLTQ VLQSSGVDMS QTNLSVQIDV GRRANAGLVP  300
SAYSSKVHEN QFESNAAISV SGFDYCNIES EQSSKRLRQE AS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g02850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417065.10.0PREDICTED: transcription factor BIM2-like
TrEMBLA0A0L9U1I60.0A0A0L9U1I6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RRY90.0A0A0S3RRY9_PHAAN; Uncharacterized protein
STRINGXP_007139391.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-60BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]