PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g01590.1

Common Name

LR48_Vigan07g096700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 308aa MW: 33379.3 Da PI: 9.085

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g01590.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	4.1e-39	22	81	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk++ Vang04g01590.1 22 PDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRN 81 68899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-24	22	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-33	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.59	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MVFPSLPIYL DPPNWSQQIH QPDAALKCPR CESANTKFCY YNNYSLSQPR HFCKTCRRYW 60 TRGGALRNVP VGGGCRRNKR NKGSGGRSKS PMKPSTGSTS ASANSSSSGC TTDHVMMTHL 120 PTPTQTQFPF LTSLHHYNSD YVSGGIGSHF GTITTTPLVG RNSSDVEFQI GTGSASSLGN 180 SGGAMLSNGL GEQWRLNNLQ QVQQQFAFLS TNLEPQIGLF QFGGGENNNA EPPSYAKEGG 240 RFNIRSKIDS ISSLSGLMPQ VNTIKMEENQ GLNLPKNLLM GNDALWNGSG NAWSEVPCFT 300 PSNNHML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g01590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429148.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like isoform X2
TrEMBL	A0A0L9UWW8	0.0	A0A0L9UWW8_PHAAN; Uncharacterized protein
STRING	XP_007139234.1	1e-173	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-29	DNA binding with one finger 2.4

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]