PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g01000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 358aa MW: 39237.6 Da PI: 8.7416 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.6 | 3e-31 | 61 | 164 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ Vang04g01000.1 61 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 155 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e +l ++ Vang04g01000.1 156 AVENVLKGA 164 *99987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.889 | 60 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-25 | 61 | 159 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
LKNPLFLSLS FSLLNPPTNI YPRFAQFYDH NLIFLSYRKK KTLQILLSPR FSIGSSKMRM 60 SCNGCRVLRK GCSENCSIRP CLQWIKSPES QANATVFLAK FYGRAGLMNL VNAGPEHLRP 120 AIFRSLLYEA CGRIVNPIYG SVGLLWSGSW QLCQAAVENV LKGAPITPIT SEAAASGRGP 180 PLKAYDIRHV SRDENSAASN ETQQQRVKTR CRVRRPVANA KPKSTTNENN GDKGTELGSS 240 EPGLVTCEWT EEAVNRSGSH ESSLSHQSEA ANAVESESMV SVETAETSIL FRDEPDSNPK 300 IVQRTDDVGL ELTLGFEPVS RAQHVVPVKK RRIELKDFSG SAESGSCKME LGLECSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g01000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017408949.1 | 0.0 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-106 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0L9TDB6 | 0.0 | A0A0L9TDB6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RQV6 | 0.0 | A0A0S3RQV6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007139150.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-101 | LOB domain-containing protein 41 |