PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g00580.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 502aa    MW: 54516.3 Da    PI: 6.3267
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g00580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.15.1e-40135195262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss
  Vang04g00580.1 135 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 195
                     7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-31132192IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32137193IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.947139193IPR003851Zinc finger, Dof-type
PROSITE patternPS013610141177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSEPKDPTIK LFGKTIPLSE IPTGSAGAPA SSSGDLVDDS VEHSHASSSN SSLESHTREE  60
GVVDEDSLGE KPADDKKEAP TQSLEEVNNP DTVSGTCEES ITEPTDKETT TLKTSKTEEE  120
LSETSKSQDK NLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR  180
NVPVGAGRRK NKSSSSHYRQ ITVPDAALQN PQLDLPNGAY HPSLKCNGAV LTFGSDTPLC  240
ESIASVLNLA DKTVHNYARN GFYKPEELKV PVPHASGEKR DDQSSKSSVT STKSVEGAST  300
NGAQEQAMPN CHRFPPQVPY YTGNSWPIPW NPVQWSSPVP PPPFCPPGFA MPLYPAAVYW  360
GCAVSGAWNI PWVAQPSSPK GATSNSGSNS PTLGKHSRED NILKSNESGG DEDGHNKENN  420
KEKCLWVPKT LRIDDSGEAE KSTIWTTLGI KNDKADSVPR ETLFKGFPSK LDEKNHSIQA  480
SPVLQANPAA LSRSLKFHET S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g00580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419419.10.0PREDICTED: cyclic dof factor 2-like
TrEMBLA0A0S3RRV00.0A0A0S3RRV0_PHAAN; Uncharacterized protein
STRINGXP_007139523.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-91cycling DOF factor 2