PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g00490.2 | ||||||||
Common Name | LR48_Vigan03g020800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 387aa MW: 43412 Da PI: 4.2277 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Vang04g00490.2 22 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACVLRG 71 789******.7*********33....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-31 | 21 | 78 | No hit | No description |
PROSITE profile | PS51032 | 19.599 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-19 | 22 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-27 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 22 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-14 | 22 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MAWDEVMKEA AALGSGRKLR KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR 60 AYDEAACVLR GANTRTNFWL SYQSSSTPAL PSKITNLLLQ RLKARNDTST KPCTVSSSSS 120 STSLLINQQQ SQQEDVRGTE STYFTLDQFS DFLNDPEDYS TNNNEFSNDS AQTDCITNSL 180 ESCLNENDDC REIEKEMVME FDFNSVTQTS SADVNSGGER EEDSEEGTDL SAQDFQFLDN 240 VVPSSYHYSL FEITEEIEEQ LEAENCGDEP SMFREVLKRM KYERKFSASL YAFNGIPECL 300 KLKVEPVNKN RSGVCISNEL TNLKMACSKN KIEAIEKNEE HIEAMDGKEP QTSVGMDCSS 360 PSFSSSIDDE LLLWNSLDLP TVCCVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 22 | 86 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g00490.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416379.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF5-like | ||||
TrEMBL | A0A0L9U2B6 | 0.0 | A0A0L9U2B6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007139548.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-22 | related to AP2 11 |
Publications ? help Back to Top | |||
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