PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29238.2 Da    PI: 9.0511
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-311565151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Vang04g00020.1 15 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 65
                    79***********************************************96 PP

2K-box100.91.7e-33881799100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +++ es+++e+ kLk++ e+Lqr+qR+llGedL++L+ keL+qLe+qL++slk++Rs+K++++l+q+ +lq+ke++l e+n++L++klee
  Vang04g00020.1  88 KPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEE 179
                     4567899**********************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.375767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-33883IPR002100Transcription factor, MADS-box
CDDcd002651.03E-44882No hitNo description
PROSITE patternPS003500963IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-33929IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261663IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-332944IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-334465IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2791177IPR002487Transcription factor, K-box
PROSITE profilePS5129715.46193183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
LENNKDMGRG RVELKRIENK INRQVTFAKR RNGLLKKAYE LSVLCDAEVA LIIFSNRGKL  60
YEFCSSTSML KTLERYQKCS YGAVEVSKPA KELESSYREY LKLKARFESL QRTQRNLLGE  120
DLGPLNTKEL EQLERQLDSS LKQVRSTKTQ FMLDQLADLQ NKEQMLVEAN RSLTMKLEEI  180
NSRNHYRQSW EAGDQSMQYG GPQNSQSQGF FQPLECNPTL QIGPDYRYNV VASDQITATT  240
PAQQVSGFIP GWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-37811771101Developmental protein SEPALLATA 3
4ox0_B6e-37811771101Developmental protein SEPALLATA 3
4ox0_C6e-37811771101Developmental protein SEPALLATA 3
4ox0_D6e-37811771101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497371.10.0developmental protein SEPALLATA 1 isoform X2
RefseqXP_017419455.10.0PREDICTED: developmental protein SEPALLATA 1 isoform X2
RefseqXP_027926535.10.0developmental protein SEPALLATA 1-like isoform X2
SwissprotQ8LLR21e-147MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3TUA20.0A0A1S3TUA2_VIGRR; developmental protein SEPALLATA 1 isoform X2
STRINGXP_007139420.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-129MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]