PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29238.2 Da PI: 9.0511 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 15 | 65 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Vang04g00020.1 15 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 65 79***********************************************96 PP | |||||||
2 | K-box | 100.9 | 1.7e-33 | 88 | 179 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++ es+++e+ kLk++ e+Lqr+qR+llGedL++L+ keL+qLe+qL++slk++Rs+K++++l+q+ +lq+ke++l e+n++L++klee Vang04g00020.1 88 KPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEE 179 4567899**********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.375 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-33 | 8 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.03E-44 | 8 | 82 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 9 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-33 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-33 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-33 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-27 | 91 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.461 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0071492 | Biological Process | cellular response to UV-A | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
LENNKDMGRG RVELKRIENK INRQVTFAKR RNGLLKKAYE LSVLCDAEVA LIIFSNRGKL 60 YEFCSSTSML KTLERYQKCS YGAVEVSKPA KELESSYREY LKLKARFESL QRTQRNLLGE 120 DLGPLNTKEL EQLERQLDSS LKQVRSTKTQ FMLDQLADLQ NKEQMLVEAN RSLTMKLEEI 180 NSRNHYRQSW EAGDQSMQYG GPQNSQSQGF FQPLECNPTL QIGPDYRYNV VASDQITATT 240 PAQQVSGFIP GWML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 6e-37 | 81 | 177 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 6e-37 | 81 | 177 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 6e-37 | 81 | 177 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 6e-37 | 81 | 177 | 1 | 101 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g00020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497371.1 | 0.0 | developmental protein SEPALLATA 1 isoform X2 | ||||
Refseq | XP_017419455.1 | 0.0 | PREDICTED: developmental protein SEPALLATA 1 isoform X2 | ||||
Refseq | XP_027926535.1 | 0.0 | developmental protein SEPALLATA 1-like isoform X2 | ||||
Swissprot | Q8LLR2 | 1e-147 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A1S3TUA2 | 0.0 | A0A1S3TUA2_VIGRR; developmental protein SEPALLATA 1 isoform X2 | ||||
STRING | XP_007139420.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-129 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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