PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0492s00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 126aa MW: 13824.5 Da PI: 6.6681 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 57.3 | 4.6e-18 | 2 | 71 | 29 | 98 |
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +f+n+ +lFG +n+l+l++ +++++r+ +++s++ eA++ +dP++Ga+g++l+l++q+++++ el+ ++ Vang0492s00080.1 2 DFENACRLFGLANLLRLMRCAEPSQRQVMANSILTEANMYGNDPIHGALGHVLNLNNQIQSVQRELDFVN 71 699**************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.168 | 1 | 74 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-15 | 2 | 70 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MDFENACRLF GLANLLRLMR CAEPSQRQVM ANSILTEANM YGNDPIHGAL GHVLNLNNQI 60 QSVQRELDFV NTMLAQCSLQ STSHVDDVVA GSSHPGQSST VAPREKEGGA QEKDAEYKRK 120 NKKDH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0492s00080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-141 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407119.1 | 2e-90 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A0S3SAE0 | 5e-89 | A0A0S3SAE0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007133438.1 | 8e-51 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 3e-11 | LOB domain-containing protein 9 |