PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0483s00100.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 376aa MW: 42158.5 Da PI: 6.6785

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0483s00100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	63	110	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f+ L llP++ p K +K++++ +Av YIk+L+ Vang0483s00100.1 63 MHIWTERERRKKMKNMFASLHALLPHL---P-SKADKSTVVDEAVSYIKNLE 110 56678*******************6...3.8**************996 PP
2	HLH	24.5	4.8e-08	253	285	4	38
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.S CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.l 38 +h +Er RR+++++ f+ L llP++ pskK Vang0483s00100.1 253 MHLSIERGRRKKMKEMFDDLSALLPQL---PSKKgF 285 7889**********************9...888855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-15	57	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.08E-11	57	114	No hit	No description
PROSITE profile	PS50888	14.037	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-15	62	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-9	64	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-8	67	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.49E-7	250	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-5	252	287	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-6	252	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-5	253	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.41	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	5.73E-5	303	363	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.8E-5	305	370	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MLLMSEDQSL LHDTNLLWEK TNSQKQKNEK VEGLMNKKRN RELNKVSSAE GNAEKSRESD 60 HEMHIWTERE RRKKMKNMFA SLHALLPHLP SKADKSTVVD EAVSYIKNLE RTLEKLEKQK 120 EERVRCGPTF WNESSPSMFT AQGLSSNYGF SNAIMGTSSN ALLFPAQQQP VAFDKTWASS 180 NMVLNVCGDE AQFCICAAHK PDTSSSSNRS SEIKTNQNLV VNTMSNDDVV DENEKKIITS 240 GEDSYDPETN NEMHLSIERG RRKKMKEMFD DLSALLPQLP SKKGFDKTWA ASNMVLNIRG 300 NEAQFSICSV HKPGLMTNIA SVLEKHNIEL ISATISANGN GSTCMIQVHG KQASDANSME 360 ETYRKAAEEI MPWIS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MLLMSEDQSL LHDTNLLWEK TNSQKQKNEK VEGLMNKKRN RELNKVSSAE GNAEKSRESD  60
HEMHIWTERE RRKKMKNMFA SLHALLPHLP SKADKSTVVD EAVSYIKNLE RTLEKLEKQK  120
EERVRCGPTF WNESSPSMFT AQGLSSNYGF SNAIMGTSSN ALLFPAQQQP VAFDKTWASS  180
NMVLNVCGDE AQFCICAAHK PDTSSSSNRS SEIKTNQNLV VNTMSNDDVV DENEKKIITS  240
GEDSYDPETN NEMHLSIERG RRKKMKEMFD DLSALLPQLP SKKGFDKTWA ASNMVLNIRG  300
NEAQFSICSV HKPGLMTNIA SVLEKHNIEL ISATISANGN GSTCMIQVHG KQASDANSME  360
ETYRKAAEEI MPWIS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0483s00100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435944.1	1e-148	PREDICTED: transcription factor bHLH95-like
TrEMBL	A0A4D6L467	0.0	A0A4D6L467_VIGUN; Transcription factor MYC2
STRING	XP_007153586.1	2e-96	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4773	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	4e-34	bHLH family protein