PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0459s00030.1
Common NameLR48_Vigan05g079200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 291aa    MW: 33463.6 Da    PI: 6.9953
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0459s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.81.9e-22128188259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK+   +++ rsYYrCt++   +C++ k+v+r ++dp +  +tY g+H+++
  Vang0459s00030.1 128 EDGYAWRKYGQKMTLHAKYLRSYYRCTYKtdqRCSAMKQVQRIQDDPPLYRTTYYGHHTCR 188
                       8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-23121190IPR003657WRKY domain
PROSITE profilePS5081120.84122190IPR003657WRKY domain
SuperFamilySSF1182901.96E-22124190IPR003657WRKY domain
SMARTSM007745.7E-33127189IPR003657WRKY domain
PfamPF031063.8E-22128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
METQFSNGKK AMEEELMRGR DMANQLLDAL GHGKLNTHLQ DEGRSKSVLP FVEDLVRKVL  60
CSFTNTLLLL NSNEITPSLS SSTTFPEMES LHETCKSRNI LNTNNRRRCY KRKSIAPTWE  120
KDSSILIEDG YAWRKYGQKM TLHAKYLRSY YRCTYKTDQR CSAMKQVQRI QDDPPLYRTT  180
YYGHHTCRSP VNPEIIMEPF SPSTSSTLLS FDNSLHSKQE NPFPSPLLAS IKQEPQKVIH  240
DEHGAQNQLS ALENLLLYDY DISFDYSRNA TLLSSAESDQ FENVFEQFGF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20127188869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RRCYKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0459s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423513.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0L9UKA10.0A0A0L9UKA1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SIM20.0A0A0S3SIM2_PHAAN; Uncharacterized protein
STRINGGLYMA13G34261.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.14e-27WRKY DNA-binding protein 62
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]