PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0450s00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 575aa    MW: 64229.9 Da    PI: 8.8536
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0450s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind311.62.7e-952965741301
         GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 
                       mddd  +  n+gyyep      +lglqlm  +++rd+k+    r+  + l++ ++++++rd          ++  rd++ ++        +++
  Vang0450s00090.1 296 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGMTDRDTKPylpaRDPAV-LMGANGTFHPRDcvvseapmpLNY-VRDNWTSQ--------RER 376
                       899988779******98..4579****************999888888.9***********666666655555.56666665........677 PP

         GAGA_bind  81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
                       ++++++ +n       +++ vl++t+ + +lq      ++++ +   ++ + +e+l ++++  ++k++++k      ++pk+kk +k+k+   
  Vang0450s00090.1 377 YFSMQQPTN-------PNYAVLPETSVAPNLQI-----IQPPDTSrDEKVDRIEELVVKKEGGQSKKRQTK---GALTTPKAKKPRKPKD--- 451
                       888887555.......56899*******99999.....333333312333444444444433333333322...3556666666666666... PP

         GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
                           + + +   +r+k +kk+++lv+ng+++D+s+lP+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgaf
  Vang0450s00090.1 452 ----NGNVPV--QRVKPPKKTMELVINGIDMDISGLPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAF 538
                       ....455666..6899***************************************************************************** PP

         GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       kk+LekLaaeGy+++np+DLk+hWA+HGtnkfvtir
  Vang0450s00090.1 539 KKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 574
                       ***********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-156296574IPR010409GAGA-binding transcriptional activator
PfamPF062172.0E-104296574IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MALCVVNVVK FRHIGKGDLW WCELAMRFGI ACSRYDSRFL VLTILGACDF RCLRFWGFGL  60
FSDLGLFAAG CNFEQWWLVV ALCCYVVVDE DGRCKDDKLL VTMKGNHGDL VGRGFVVEFM  120
VEPMVHVVLM MNPIMDLVGE PMLDIIAKSQ PKTNYDNVCV VYVSSIVKNQ DVSNGGSVPI  180
DSVFLADMPS LKDVTSIVVG SPTSTRYKIV TMFFPRNPYI SLILPLLFHT SYLSCAFLFP  240
SQLFITLSLS PFLLRLSSLS SLFAFLFLSL SDFCLSHLSL SGRANPKDRL HPPIAMDDDV  300
LNMPNWGYYE PFRGGHLGLQ LMPGMTDRDT KPYLPARDPA VLMGANGTFH PRDCVVSEAP  360
MPLNYVRDNW TSQRERYFSM QQPTNPNYAV LPETSVAPNL QIIQPPDTSR DEKVDRIEEL  420
VVKKEGGQSK KRQTKGALTT PKAKKPRKPK DNGNVPVQRV KPPKKTMELV INGIDMDISG  480
LPIPVCSCTG SPQQCYRWGC GGWQSACCTT NVSIYPLPMS MKRRGARIAG RKMSQGAFKK  540
VLEKLAAEGY NFANPIDLKT HWARHGTNKF VTIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0450s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505856.20.0protein BASIC PENTACYSTEINE2 isoform X1
TrEMBLA0A0S3R1140.0A0A0S3R114_PHAAN; Uncharacterized protein
STRINGXP_007158817.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-100basic pentacysteine 2