PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0450s00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 575aa MW: 64229.9 Da PI: 8.8536 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 311.6 | 2.7e-95 | 296 | 574 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 mddd + n+gyyep +lglqlm +++rd+k+ r+ + l++ ++++++rd ++ rd++ ++ +++ Vang0450s00090.1 296 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGMTDRDTKPylpaRDPAV-LMGANGTFHPRDcvvseapmpLNY-VRDNWTSQ--------RER 376 899988779******98..4579****************999888888.9***********666666655555.56666665........677 PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172 ++++++ +n +++ vl++t+ + +lq ++++ + ++ + +e+l ++++ ++k++++k ++pk+kk +k+k+ Vang0450s00090.1 377 YFSMQQPTN-------PNYAVLPETSVAPNLQI-----IQPPDTSrDEKVDRIEELVVKKEGGQSKKRQTK---GALTTPKAKKPRKPKD--- 451 888887555.......56899*******99999.....333333312333444444444433333333322...3556666666666666... PP GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265 + + + +r+k +kk+++lv+ng+++D+s+lP+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgaf Vang0450s00090.1 452 ----NGNVPV--QRVKPPKKTMELVINGIDMDISGLPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAF 538 ....455666..6899***************************************************************************** PP GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 kk+LekLaaeGy+++np+DLk+hWA+HGtnkfvtir Vang0450s00090.1 539 KKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 574 ***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.3E-156 | 296 | 574 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.0E-104 | 296 | 574 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MALCVVNVVK FRHIGKGDLW WCELAMRFGI ACSRYDSRFL VLTILGACDF RCLRFWGFGL 60 FSDLGLFAAG CNFEQWWLVV ALCCYVVVDE DGRCKDDKLL VTMKGNHGDL VGRGFVVEFM 120 VEPMVHVVLM MNPIMDLVGE PMLDIIAKSQ PKTNYDNVCV VYVSSIVKNQ DVSNGGSVPI 180 DSVFLADMPS LKDVTSIVVG SPTSTRYKIV TMFFPRNPYI SLILPLLFHT SYLSCAFLFP 240 SQLFITLSLS PFLLRLSSLS SLFAFLFLSL SDFCLSHLSL SGRANPKDRL HPPIAMDDDV 300 LNMPNWGYYE PFRGGHLGLQ LMPGMTDRDT KPYLPARDPA VLMGANGTFH PRDCVVSEAP 360 MPLNYVRDNW TSQRERYFSM QQPTNPNYAV LPETSVAPNL QIIQPPDTSR DEKVDRIEEL 420 VVKKEGGQSK KRQTKGALTT PKAKKPRKPK DNGNVPVQRV KPPKKTMELV INGIDMDISG 480 LPIPVCSCTG SPQQCYRWGC GGWQSACCTT NVSIYPLPMS MKRRGARIAG RKMSQGAFKK 540 VLEKLAAEGY NFANPIDLKT HWARHGTNKF VTIR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0450s00090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505856.2 | 0.0 | protein BASIC PENTACYSTEINE2 isoform X1 | ||||
TrEMBL | A0A0S3R114 | 0.0 | A0A0S3R114_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158817.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2370 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-100 | basic pentacysteine 2 |